Connectionists: IMaGES CRAN package for graph brain connectivity identification
Stephen José Hanson
jose at rubic.rutgers.edu
Sun Feb 10 08:53:57 EST 2019
This is a new implementation and update for IMaGES: Functions for the
implementation of Independent Multiple-sample Greedy Equivalence Search
(IMaGES), a causal inference algorithm for creating aggregate graphs and
structural equation modeling data for one or more datasets. This package
is useful for time series data with specific regions of interest. This
implementation is inspired by the paper "Six problems for causal
inference from fMRI" by Ramsey, Hanson, Hanson, Halchenko, Poldrack, and
Glymour (2010) <doi:10.1016/j.neuroimage.2009.08.065
<https://doi.org/10.1016/j.neuroimage.2009.08.065>>. The IMaGES
algorithm uses a modified BIC score to compute goodness of fit of edge
additions, subtractions, and turns across all datasets and returns a
representative graph, along with structural equation modeling data for
the global graph and individual datasets, means, and standard errors.
Functions for plotting the resulting graph(s) are provided. This package
is built upon the 'pcalg' packageand can be found here:
https://cran.r-project.org/web/packages/IMaGES/index.html
--
Stephen José Hanson
Professor
Director RUBIC (University-Wide)
Department of Psychology (NK)
Cognitive Science Center (NB)
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