From predragp at cs.cmu.edu  Thu Oct  1 00:30:55 2015
From: predragp at cs.cmu.edu (Predrag Punosevac)
Date: Thu, 01 Oct 2015 00:30:55 -0400
Subject: MATLAB updated on Ari and Foxconn
In-Reply-To: <CABCJM8Ms-anbXkx6UF1xG0Ep-5qHf6GguTA586TR-7B6fcTD-g@mail.gmail.com>
References: <CABCJM8Ms-anbXkx6UF1xG0Ep-5qHf6GguTA586TR-7B6fcTD-g@mail.gmail.com>
Message-ID: <20151001053055.8xmY6XXF%predragp@cs.cmu.edu>

Ankit Laddha <aladdha at andrew.cmu.edu> wrote:

> Hi
> 
> Can I start running jobs on ARI again?

MATLAB is now updated to the latest 2015b on both ARI and Foxconn and
fully functional (I tested it). I will update MATLAB on desktops and few
older computing nodes tomorrow evening.

I will make a plan on Friday how to upgrade both MATLAB and OS to RHEL
7.1 on lov3,lov3, and low1. I will also add the scratch space on those
three nodes.

Best,
Predrag


> I am asking because you emailed that you will be updating MATLAB on ARI
> today, but I didn't get any email about the completion. The job I am
> planning to run will take 3-4 days to complete.
> 
> Thank You
> 
> 
> 
> -- 
> Regards,
> Ankit Laddha
> MS in Robotics Student
> Carnegie Mellon University


From predragp at cs.cmu.edu  Sat Oct  3 00:05:15 2015
From: predragp at cs.cmu.edu (Predrag Punosevac)
Date: Sat, 03 Oct 2015 00:05:15 -0400
Subject: MATLAB updated on
Message-ID: <20151003050515.aHebUITu%predragp@cs.cmu.edu>

William Herlands <william.herlands at gmail.com> wrote:

> Hi Predrag,
> 
> Do you know when Matlab will be updated on the neill machines? I completely
> understand that these updates take lots of time, but I have to run some
> code for aistats submission next Friday. Perhaps alternatively, could you
> provide me with an account+scratch directory on ARI or Foxconn so I can run
> Matlab on those machines?


MATLAB is now updated to the latest 2015b on the following machines

neill1
neill2
neill3
neill4
lot1
compute-0-0
compute-0-1
charity
ari
foxconn

My plan is to upgrade MATLAB over the weekend on all remaining desktops.
Some are already upgraded. Remaining computing nodes

lov3
lov4
low1

will hopefully be upgraded on Monday when I am planning to replace
existing HDDs with new drives running RHEL 7.1.

NREC computing node lot2 is still in Supermicro shop awaiting for proper
bug free firmware. Once machine is fixed it will be upgraded to 7.1 as
well.


Predrag

> 
> Thank you very much!
> Regards
> William
> 
> On Thu, Oct 1, 2015 at 12:30 AM, Predrag Punosevac <predragp at cs.cmu.edu>
> wrote:
> 
> > Ankit Laddha <aladdha at andrew.cmu.edu> wrote:
> >
> > > Hi
> > >
> > > Can I start running jobs on ARI again?
> >
> > MATLAB is now updated to the latest 2015b on both ARI and Foxconn and
> > fully functional (I tested it). I will update MATLAB on desktops and few
> > older computing nodes tomorrow evening.
> >
> > I will make a plan on Friday how to upgrade both MATLAB and OS to RHEL
> > 7.1 on lov3,lov3, and low1. I will also add the scratch space on those
> > three nodes.
> >
> > Best,
> > Predrag
> >
> >
> > > I am asking because you emailed that you will be updating MATLAB on ARI
> > > today, but I didn't get any email about the completion. The job I am
> > > planning to run will take 3-4 days to complete.
> > >
> > > Thank You
> > >
> > >
> > >
> > > --
> > > Regards,
> > > Ankit Laddha
> > > MS in Robotics Student
> > > Carnegie Mellon University
> >
> >
> 
> 
> -- 
> William Herlands



From predragp at cs.cmu.edu  Sun Oct  4 22:46:10 2015
From: predragp at cs.cmu.edu (Predrag Punosevac)
Date: Sun, 04 Oct 2015 22:46:10 -0400
Subject: MATLAB updated on the Desktops
Message-ID: <20151005034610.h9pVbHYu%predragp@cs.cmu.edu>

Dear Autonians,

MATLAB is now updated on all desktops in the Lab. That leaves us with 
LOV3, LOV4, and LOW1 to be updated. As I said earlier I am planning to
upgrade OS on these computing nodes not just MATLAB.

Best,
Predrag


From predragp at cs.cmu.edu  Mon Oct  5 18:31:48 2015
From: predragp at cs.cmu.edu (Predrag Punosevac)
Date: Mon, 05 Oct 2015 18:31:48 -0400
Subject: Friday deadline
Message-ID: <20151005233148.uxwR5ufq%predragp@cs.cmu.edu>

Dear Autonians,

Due to Friday EI deadline MATLAB upgrade on LOV3, LOV4, and LOW1 is
postponed until Friday afternoon.

Predrag

From awd at cs.cmu.edu  Wed Oct 14 17:52:39 2015
From: awd at cs.cmu.edu (Artur Dubrawski)
Date: Wed, 14 Oct 2015 17:52:39 -0400
Subject: Ina wins a conference award
Message-ID: <561ECEA7.104@cs.cmu.edu>

Team,

I am very pleased to let you know that Dr. Madalina Fiterau has just won 
the
2016 SCCM Star Research Achievement Award. The reviewers for the
Annual Congress of the Society of Critical Care Medicine ranked her
abstract titled "Using expert review to calibrate semi-automated 
adjudication
of vital sign alerts in Step-Down Units" among the highest scored 
submissions.

It is not common for an author with a ML background to receive such a 
recognition
from a society focused on a very specific subset of clinical research 
and practice.

Way to go Ina!

Artur

From mille856 at gmail.com  Wed Oct 14 19:05:52 2015
From: mille856 at gmail.com (Kyle Miller)
Date: Wed, 14 Oct 2015 19:05:52 -0400
Subject: Ina wins a conference award
In-Reply-To: <561ECEA7.104@cs.cmu.edu>
References: <561ECEA7.104@cs.cmu.edu>
Message-ID: <CANPcXGYb_p6PHUDgVtVcqV0-zf9f70ZLpnkiWdNU+aaHWx9tWQ@mail.gmail.com>

Congratulations Ina! Great work!
On Oct 14, 2015 5:52 PM, "Artur Dubrawski" <awd at cs.cmu.edu> wrote:

> Team,
>
> I am very pleased to let you know that Dr. Madalina Fiterau has just won
> the
> 2016 SCCM Star Research Achievement Award. The reviewers for the
> Annual Congress of the Society of Critical Care Medicine ranked her
> abstract titled "Using expert review to calibrate semi-automated
> adjudication
> of vital sign alerts in Step-Down Units" among the highest scored
> submissions.
>
> It is not common for an author with a ML background to receive such a
> recognition
> from a society focused on a very specific subset of clinical research and
> practice.
>
> Way to go Ina!
>
> Artur
>
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From mdeartea at andrew.cmu.edu  Wed Oct 14 19:20:13 2015
From: mdeartea at andrew.cmu.edu (Maria De Arteaga Gonzalez)
Date: Wed, 14 Oct 2015 23:20:13 +0000
Subject: Ina wins a conference award
In-Reply-To: <561ECEA7.104@cs.cmu.edu>
References: <561ECEA7.104@cs.cmu.edu>
Message-ID: <56a9e621-1307-43da-b94c-2ccb78fdff3c@PGH-MSGHT-02.andrew.ad.cmu.edu>

Congrats, Ina! 

Mar?a De Arteaga
PhD Student in Machine Learning and Public Policy
Carnegie Mellon University

________________________________________
From: Autonlab-users [autonlab-users-bounces at autonlab.org] on behalf of Artur Dubrawski [awd at cs.cmu.edu]
Sent: Wednesday, October 14, 2015 5:52 PM
To: users at autonlab.org
Cc: Tom Mitchell
Subject: Ina wins a conference award

Team,

I am very pleased to let you know that Dr. Madalina Fiterau has just won
the
2016 SCCM Star Research Achievement Award. The reviewers for the
Annual Congress of the Society of Critical Care Medicine ranked her
abstract titled "Using expert review to calibrate semi-automated
adjudication
of vital sign alerts in Step-Down Units" among the highest scored
submissions.

It is not common for an author with a ML background to receive such a
recognition
from a society focused on a very specific subset of clinical research
and practice.

Way to go Ina!

Artur


From kandasamy at cmu.edu  Wed Oct 14 19:45:25 2015
From: kandasamy at cmu.edu (Kirthevasan Kandasamy)
Date: Wed, 14 Oct 2015 19:45:25 -0400
Subject: Ina wins a conference award
In-Reply-To: <56a9e621-1307-43da-b94c-2ccb78fdff3c@PGH-MSGHT-02.andrew.ad.cmu.edu>
References: <561ECEA7.104@cs.cmu.edu>
 <56a9e621-1307-43da-b94c-2ccb78fdff3c@PGH-MSGHT-02.andrew.ad.cmu.edu>
Message-ID: <CAB-GCq79=CziUjGc3PzfGEr6AaF+_iwfSa5BA6UTW=4aGCL2pg@mail.gmail.com>

Congrats Ina.
this is great news !

On Wed, Oct 14, 2015 at 7:20 PM, Maria De Arteaga Gonzalez <
mdeartea at andrew.cmu.edu> wrote:

> Congrats, Ina!
>
> Mar?a De Arteaga
> PhD Student in Machine Learning and Public Policy
> Carnegie Mellon University
>
> ________________________________________
> From: Autonlab-users [autonlab-users-bounces at autonlab.org] on behalf of
> Artur Dubrawski [awd at cs.cmu.edu]
> Sent: Wednesday, October 14, 2015 5:52 PM
> To: users at autonlab.org
> Cc: Tom Mitchell
> Subject: Ina wins a conference award
>
> Team,
>
> I am very pleased to let you know that Dr. Madalina Fiterau has just won
> the
> 2016 SCCM Star Research Achievement Award. The reviewers for the
> Annual Congress of the Society of Critical Care Medicine ranked her
> abstract titled "Using expert review to calibrate semi-automated
> adjudication
> of vital sign alerts in Step-Down Units" among the highest scored
> submissions.
>
> It is not common for an author with a ML background to receive such a
> recognition
> from a society focused on a very specific subset of clinical research
> and practice.
>
> Way to go Ina!
>
> Artur
>
>
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From prateek1.tandon at gmail.com  Wed Oct 14 20:06:10 2015
From: prateek1.tandon at gmail.com (Prateek Tandon)
Date: Wed, 14 Oct 2015 17:06:10 -0700
Subject: Ina wins a conference award
In-Reply-To: <CAB-GCq79=CziUjGc3PzfGEr6AaF+_iwfSa5BA6UTW=4aGCL2pg@mail.gmail.com>
References: <561ECEA7.104@cs.cmu.edu>
 <56a9e621-1307-43da-b94c-2ccb78fdff3c@PGH-MSGHT-02.andrew.ad.cmu.edu>
 <CAB-GCq79=CziUjGc3PzfGEr6AaF+_iwfSa5BA6UTW=4aGCL2pg@mail.gmail.com>
Message-ID: <CAL-8PPW7pmDe5a5vhg6=Q2cd6BPxVwztj+8xgMbVZDYJg9yD8g@mail.gmail.com>

Congrats Ina!

On Oct 14, 2015 4:51 PM, "Kirthevasan Kandasamy" <kandasamy at cmu.edu> wrote:
>
> Congrats Ina.
> this is great news !
>
> On Wed, Oct 14, 2015 at 7:20 PM, Maria De Arteaga Gonzalez <
mdeartea at andrew.cmu.edu> wrote:
>>
>> Congrats, Ina!
>>
>> Mar?a De Arteaga
>> PhD Student in Machine Learning and Public Policy
>> Carnegie Mellon University
>>
>> ________________________________________
>> From: Autonlab-users [autonlab-users-bounces at autonlab.org] on behalf of
Artur Dubrawski [awd at cs.cmu.edu]
>> Sent: Wednesday, October 14, 2015 5:52 PM
>> To: users at autonlab.org
>> Cc: Tom Mitchell
>> Subject: Ina wins a conference award
>>
>> Team,
>>
>> I am very pleased to let you know that Dr. Madalina Fiterau has just won
>> the
>> 2016 SCCM Star Research Achievement Award. The reviewers for the
>> Annual Congress of the Society of Critical Care Medicine ranked her
>> abstract titled "Using expert review to calibrate semi-automated
>> adjudication
>> of vital sign alerts in Step-Down Units" among the highest scored
>> submissions.
>>
>> It is not common for an author with a ML background to receive such a
>> recognition
>> from a society focused on a very specific subset of clinical research
>> and practice.
>>
>> Way to go Ina!
>>
>> Artur
>>
>
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From awm at cs.cmu.edu  Wed Oct 14 20:13:57 2015
From: awm at cs.cmu.edu (Andrew Moore)
Date: Wed, 14 Oct 2015 20:13:57 -0400
Subject: Ina wins a conference award
In-Reply-To: <CAL-8PPW7pmDe5a5vhg6=Q2cd6BPxVwztj+8xgMbVZDYJg9yD8g@mail.gmail.com>
References: <561ECEA7.104@cs.cmu.edu>
 <56a9e621-1307-43da-b94c-2ccb78fdff3c@PGH-MSGHT-02.andrew.ad.cmu.edu>
 <CAB-GCq79=CziUjGc3PzfGEr6AaF+_iwfSa5BA6UTW=4aGCL2pg@mail.gmail.com>
 <CAL-8PPW7pmDe5a5vhg6=Q2cd6BPxVwztj+8xgMbVZDYJg9yD8g@mail.gmail.com>
Message-ID: <CAPQV5HTag-aJfMS8uiYdLgXrsPgVBwqFGSvOw07odUGJDvuJqA@mail.gmail.com>

I am so excited! Congratulations! I want to read the paper and (if this
news is public) tweet about it.

Can someone point me to the paper?


On Wed, Oct 14, 2015 at 8:06 PM, Prateek Tandon <prateek1.tandon at gmail.com>
wrote:

> Congrats Ina!
>
> On Oct 14, 2015 4:51 PM, "Kirthevasan Kandasamy" <kandasamy at cmu.edu>
> wrote:
> >
> > Congrats Ina.
> > this is great news !
> >
> > On Wed, Oct 14, 2015 at 7:20 PM, Maria De Arteaga Gonzalez <
> mdeartea at andrew.cmu.edu> wrote:
> >>
> >> Congrats, Ina!
> >>
> >> Mar?a De Arteaga
> >> PhD Student in Machine Learning and Public Policy
> >> Carnegie Mellon University
> >>
> >> ________________________________________
> >> From: Autonlab-users [autonlab-users-bounces at autonlab.org] on behalf
> of Artur Dubrawski [awd at cs.cmu.edu]
> >> Sent: Wednesday, October 14, 2015 5:52 PM
> >> To: users at autonlab.org
> >> Cc: Tom Mitchell
> >> Subject: Ina wins a conference award
> >>
> >> Team,
> >>
> >> I am very pleased to let you know that Dr. Madalina Fiterau has just won
> >> the
> >> 2016 SCCM Star Research Achievement Award. The reviewers for the
> >> Annual Congress of the Society of Critical Care Medicine ranked her
> >> abstract titled "Using expert review to calibrate semi-automated
> >> adjudication
> >> of vital sign alerts in Step-Down Units" among the highest scored
> >> submissions.
> >>
> >> It is not common for an author with a ML background to receive such a
> >> recognition
> >> from a society focused on a very specific subset of clinical research
> >> and practice.
> >>
> >> Way to go Ina!
> >>
> >> Artur
> >>
> >
>



-- 
Andrew Moore <http://www.cs.cmu.edu/~awm/>, Dean, School of Computer Science
<http://www.cs.cmu.edu/>, Carnegie Mellon. Twitter feed
<https://twitter.com/awmcmu>
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From yifeim at cs.cmu.edu  Thu Oct 15 09:41:07 2015
From: yifeim at cs.cmu.edu (yifei ma)
Date: Thu, 15 Oct 2015 09:41:07 -0400
Subject: Ina wins a conference award
In-Reply-To: <561ECEA7.104@cs.cmu.edu>
References: <561ECEA7.104@cs.cmu.edu>
Message-ID: <561FACF3.2020405@cs.cmu.edu>

Congratulations, Ina!

Best,
Yifei

On 10/14/15 5:52 PM, Artur Dubrawski wrote:
> Team,
>
> I am very pleased to let you know that Dr. Madalina Fiterau has just 
> won the
> 2016 SCCM Star Research Achievement Award. The reviewers for the
> Annual Congress of the Society of Critical Care Medicine ranked her
> abstract titled "Using expert review to calibrate semi-automated 
> adjudication
> of vital sign alerts in Step-Down Units" among the highest scored 
> submissions.
>
> It is not common for an author with a ML background to receive such a 
> recognition
> from a society focused on a very specific subset of clinical research 
> and practice.
>
> Way to go Ina!
>
> Artur


From nick.gisolfi at gmail.com  Thu Oct 15 09:48:54 2015
From: nick.gisolfi at gmail.com (Nick Gisolfi)
Date: Thu, 15 Oct 2015 09:48:54 -0400
Subject: Ina wins a conference award
In-Reply-To: <561FACF3.2020405@cs.cmu.edu>
References: <561ECEA7.104@cs.cmu.edu>
	<561FACF3.2020405@cs.cmu.edu>
Message-ID: <CAJ4FYPwJSrCTHqTzrL_d3XbQH7yw-3oVtTW4JzMofy0GWHLvXQ@mail.gmail.com>

Awesome work, Ina!  Congratulations!!

- Nick

On Thu, Oct 15, 2015 at 9:41 AM, yifei ma <yifeim at cs.cmu.edu> wrote:

> Congratulations, Ina!
>
> Best,
> Yifei
>
>
> On 10/14/15 5:52 PM, Artur Dubrawski wrote:
>
>> Team,
>>
>> I am very pleased to let you know that Dr. Madalina Fiterau has just won
>> the
>> 2016 SCCM Star Research Achievement Award. The reviewers for the
>> Annual Congress of the Society of Critical Care Medicine ranked her
>> abstract titled "Using expert review to calibrate semi-automated
>> adjudication
>> of vital sign alerts in Step-Down Units" among the highest scored
>> submissions.
>>
>> It is not common for an author with a ML background to receive such a
>> recognition
>> from a society focused on a very specific subset of clinical research and
>> practice.
>>
>> Way to go Ina!
>>
>> Artur
>>
>
>
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From awd at cs.cmu.edu  Thu Oct 15 10:27:45 2015
From: awd at cs.cmu.edu (Artur Dubrawski)
Date: Thu, 15 Oct 2015 10:27:45 -0400
Subject: Karen Chen's paper a finalist at AMIA
In-Reply-To: <55F99F8D.4040805@cs.cmu.edu>
References: <55F99F8D.4040805@cs.cmu.edu>
Message-ID: <561FB7E1.4060408@cs.cmu.edu>

Team,

Apparently, Karen was not yet done collecting awards for her AMIA paper :-)

On top of the one mentioned below, it has also been named, independently,
the 3rd Best of Student Paper in Knowledge Discovery and Data Mining at 
AMIA 2015.

This is given by the AMIA Knowledge Discovery and Data Mining (KDDM) 
Working Group,
the other one by the Program Committee of the whole conference, and 
apparently
the qualification processes were independent.

I am not sure what is the going Auton Lab record for the number of 
awards one paper
has received at a single major conference, but this one must be pretty 
close to that.

Congrats Karen!

Artur


On 9/16/2015 12:57 PM, Artur Dubrawski wrote:
> Friends,
>
> Please join me in congratulating Karen.
>
> Her paper titled "Modelling Risk of Cardio-Respiratory Instability as 
> a Heterogeneous Process" has been selected as one of the eight student 
> paper finalists at the American Medical Informatics Association 2015 
> Annual Symposium.
>
> Very well done indeed!
>
> Cheers,
> Artur
>

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From pinskymr at ccm.upmc.edu  Thu Oct 15 10:57:53 2015
From: pinskymr at ccm.upmc.edu (Pinsky, Michael)
Date: Thu, 15 Oct 2015 14:57:53 +0000
Subject: Karen Chen's paper a finalist at AMIA
In-Reply-To: <561FB7E1.4060408@cs.cmu.edu>
References: <55F99F8D.4040805@cs.cmu.edu> <561FB7E1.4060408@cs.cmu.edu>
Message-ID: <B7D8A47572B9564AB31AC265FE5523C1090E7030@MSXMBXNSPRD39.acct.upmchs.net>

Excellent Karen!

Michael R. Pinsky, MD, CM, Dr hc, MCCM, FCCP
Visiting Professor of Anesthesiology and Bioengineering
UCSD Department of Anesthesiology
East Campus Office Building, MC 7651
9444 Medical Center Drive, Room 3-048
La Jolla, CA  92093
T 858-657-7414
E mpinsky at ucsd.edu<mailto:mpinsky at ucsd.edu>
 E pinskymr at upmc.edu<mailto:pinskymr at upmc.edu>

Admin assistant: Keith Lander
klander at ucsd.edu<mailto:klander at ucsd.edu>
T 858-642-3340

From: Artur Dubrawski [mailto:awd at cs.cmu.edu]
Sent: Thursday, October 15, 2015 7:28 AM
To: users at autonlab.org
Cc: Hravnak, Marilyn T <mhra at pitt.edu>; Ramayya Krishnan <rk2x at cmu.edu>; Pinsky, Michael <pinskymr at ccm.upmc.edu>; Rahul Telang <rtelang at andrew.cmu.edu>; Clermont, Gilles <clermontg at ccm.upmc.edu>; Andrew Moore <awm at cs.cmu.edu>
Subject: Re: Karen Chen's paper a finalist at AMIA

Team,

Apparently, Karen was not yet done collecting awards for her AMIA paper :-)

On top of the one mentioned below, it has also been named, independently,
the 3rd Best of Student Paper in Knowledge Discovery and Data Mining at AMIA 2015.

This is given by the AMIA Knowledge Discovery and Data Mining (KDDM) Working Group,
the other one by the Program Committee of the whole conference, and apparently
the qualification processes were independent.

I am not sure what is the going Auton Lab record for the number of awards one paper
has received at a single major conference, but this one must be pretty close to that.

Congrats Karen!

Artur

On 9/16/2015 12:57 PM, Artur Dubrawski wrote:
Friends,

Please join me in congratulating Karen.

Her paper titled "Modelling Risk of Cardio-Respiratory Instability as a Heterogeneous Process" has been selected as one of the eight student paper finalists at the American Medical Informatics Association 2015 Annual Symposium.

Very well done indeed!

Cheers,
Artur

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From ravanbakhsh at gmail.com  Thu Oct 15 11:13:49 2015
From: ravanbakhsh at gmail.com (Siamak Ravanbakhsh)
Date: Thu, 15 Oct 2015 11:13:49 -0400
Subject: Ina wins a conference award
In-Reply-To: <CAJ4FYPwJSrCTHqTzrL_d3XbQH7yw-3oVtTW4JzMofy0GWHLvXQ@mail.gmail.com>
References: <561ECEA7.104@cs.cmu.edu> <561FACF3.2020405@cs.cmu.edu>
 <CAJ4FYPwJSrCTHqTzrL_d3XbQH7yw-3oVtTW4JzMofy0GWHLvXQ@mail.gmail.com>
Message-ID: <CAE=pKM5qADwpOxGh_cx7+O3cBDprPKqB4OB6TJ+z7gOCyQnMFw@mail.gmail.com>

Congratulations Ina!


On Thu, Oct 15, 2015 at 9:48 AM, Nick Gisolfi <nick.gisolfi at gmail.com>
wrote:

> Awesome work, Ina!  Congratulations!!
>
> - Nick
>
> On Thu, Oct 15, 2015 at 9:41 AM, yifei ma <yifeim at cs.cmu.edu> wrote:
>
>> Congratulations, Ina!
>>
>> Best,
>> Yifei
>>
>>
>> On 10/14/15 5:52 PM, Artur Dubrawski wrote:
>>
>>> Team,
>>>
>>> I am very pleased to let you know that Dr. Madalina Fiterau has just won
>>> the
>>> 2016 SCCM Star Research Achievement Award. The reviewers for the
>>> Annual Congress of the Society of Critical Care Medicine ranked her
>>> abstract titled "Using expert review to calibrate semi-automated
>>> adjudication
>>> of vital sign alerts in Step-Down Units" among the highest scored
>>> submissions.
>>>
>>> It is not common for an author with a ML background to receive such a
>>> recognition
>>> from a society focused on a very specific subset of clinical research
>>> and practice.
>>>
>>> Way to go Ina!
>>>
>>> Artur
>>>
>>
>>
>


-- 
--Siamak
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From junieroliva at gmail.com  Thu Oct 15 11:33:59 2015
From: junieroliva at gmail.com (Junier Oliva)
Date: Thu, 15 Oct 2015 11:33:59 -0400
Subject: Ina wins a conference award
In-Reply-To: <CAJ4FYPwJSrCTHqTzrL_d3XbQH7yw-3oVtTW4JzMofy0GWHLvXQ@mail.gmail.com>
References: <561ECEA7.104@cs.cmu.edu> <561FACF3.2020405@cs.cmu.edu>
 <CAJ4FYPwJSrCTHqTzrL_d3XbQH7yw-3oVtTW4JzMofy0GWHLvXQ@mail.gmail.com>
Message-ID: <CAPGQ=J0Xfs=oDG5P3WSOhg4aEZ-2940+Wu5gZ+kUGDdboaPm_A@mail.gmail.com>

Congrats!

-Junier

On Thu, Oct 15, 2015 at 9:48 AM, Nick Gisolfi <nick.gisolfi at gmail.com>
wrote:

> Awesome work, Ina!  Congratulations!!
>
> - Nick
>
> On Thu, Oct 15, 2015 at 9:41 AM, yifei ma <yifeim at cs.cmu.edu> wrote:
>
>> Congratulations, Ina!
>>
>> Best,
>> Yifei
>>
>>
>> On 10/14/15 5:52 PM, Artur Dubrawski wrote:
>>
>>> Team,
>>>
>>> I am very pleased to let you know that Dr. Madalina Fiterau has just won
>>> the
>>> 2016 SCCM Star Research Achievement Award. The reviewers for the
>>> Annual Congress of the Society of Critical Care Medicine ranked her
>>> abstract titled "Using expert review to calibrate semi-automated
>>> adjudication
>>> of vital sign alerts in Step-Down Units" among the highest scored
>>> submissions.
>>>
>>> It is not common for an author with a ML background to receive such a
>>> recognition
>>> from a society focused on a very specific subset of clinical research
>>> and practice.
>>>
>>> Way to go Ina!
>>>
>>> Artur
>>>
>>
>>
>
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From tom.mitchell at cs.cmu.edu  Thu Oct 15 23:00:46 2015
From: tom.mitchell at cs.cmu.edu (Tom Mitchell)
Date: Thu, 15 Oct 2015 23:00:46 -0400
Subject: Ina wins a conference award
In-Reply-To: <561ECEA7.104@cs.cmu.edu>
References: <561ECEA7.104@cs.cmu.edu>
Message-ID: <CAAZSyQ8B5krfDtx27+OHcowqK7EwCg3PEv4S2JOsU-FmkbsKTA@mail.gmail.com>

Wonderful news -- congratulations Ina!!

On Wednesday, October 14, 2015, Artur Dubrawski <awd at cs.cmu.edu> wrote:

> Team,
>
> I am very pleased to let you know that Dr. Madalina Fiterau has just won
> the
> 2016 SCCM Star Research Achievement Award. The reviewers for the
> Annual Congress of the Society of Critical Care Medicine ranked her
> abstract titled "Using expert review to calibrate semi-automated
> adjudication
> of vital sign alerts in Step-Down Units" among the highest scored
> submissions.
>
> It is not common for an author with a ML background to receive such a
> recognition
> from a society focused on a very specific subset of clinical research and
> practice.
>
> Way to go Ina!
>
> Artur
>


-- 
Sent from IPhone - please excuse brevity
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From predragp at cs.cmu.edu  Sat Oct 17 23:58:33 2015
From: predragp at cs.cmu.edu (Predrag Punosevac)
Date: Sat, 17 Oct 2015 23:58:33 -0400
Subject: R updates
In-Reply-To: <f5eefc346c7484a1858404053a31fb93.squirrel@webmail.andrew.cmu.edu>
References: <f5eefc346c7484a1858404053a31fb93.squirrel@webmail.andrew.cmu.edu>
Message-ID: <20151018045833.mWOxMQ9z%predragp@cs.cmu.edu>

mille856 at andrew.cmu.edu wrote:

> Predrag,
>    It seems to me that when R is updated on the compute nodes, the
> libraries are not rolled into the new version. If you have time, could
> you look into automating the reinstallation of packages?
> 
> http://stackoverflow.com/questions/1401904/painless-way-to-install-a-new-version-of-r-on-windows
> 
> -Kyle

Dear Autonians,

Finally, I put some time into R installation and this is a brief summary
of what I found out:

1. We use official EPEL (Extra Packages for Enterprise Linux) repo for R
which is second to none. These packages are officially approved by Red
Hat corporation. 

2. I have enabled yum-cron on all computing nodes and desktops 

root at lov3$ service yum-cron status
Nightly yum update is enabled

Such aggressive updating practice sometimes lead to breakage like in
the case of plotting with R three weeks ago. Since we use high quality
repository packages are promptly fixed. You can check for yourself that
plotting in R is working on your desktops and computing nodes and that
you are running the latest R-3.2.2. We are research Laboratory and
having more conservative policy runs against my scientific instincts.


3. Some cutting-edge research grade packages are installed using built
in R package manager. We have no choice with those. Remember we are
research grade facility not a bank or insurance company. I am not 100%
sure if those get broken during minor version upgrades. They typically
get installed in

root at lov3$ pwd
/usr/lib64/R/library

I have run 

update.packages(checkBuilt=TRUE, ask=FALSE)

on LOV3 as a test. If you are heavy R user please try to use R on LOV3
and look for the signs of broken packages. Please report any new issues.


4. Some of you have installed your own R packages with your normal user
privileges as in Kyles case.

Those packages get installed in

[mille856 at line x86_64-redhat-linux-gnu-library]$ ls
3.0  3.1  3.2

Since Kyle is running R-3.2.2 now obviously the packages he installed
should be in 3.2. You can try to update only those using something like
grepping the list of outdated packages  which can be found running the
command 

> installed.packages()

and then selecting only your own packages from that list. If that sounds
too complicated you can just run 

update.packages(checkBuilt=TRUE, ask=FALSE)

which will upgrade all packages to the latest and the greatest version
including your own. However all those packages will be saved locally.
That is OK. I am OK having a multiple copies of R packages. There is
nothing I as a system admin can do about your custom installed R
packages. Once you install them you own them and you are in charge with
updates.

The link Kyle provided 

http://stackoverflow.com/questions/1401904/painless-way-to-install-a-new-version-of-r-on-windows

is very good and contains wealth of information. However not all that
info is applicable to our environment. If you need any assistance
processing the information from that web site please ping me.


Best,
Predrag


From predragp at cs.cmu.edu  Sun Oct 18 00:10:30 2015
From: predragp at cs.cmu.edu (Predrag Punosevac)
Date: Sun, 18 Oct 2015 00:10:30 -0400
Subject: MATLAB upgrade on LOV3, LOV4, and LOW1
Message-ID: <20151018051030.rRfUkjLL%predragp@cs.cmu.edu>

Dear Autonians,

About a week ago I promised that I will upgrade not just MATLAB but also
operating system on LOV3, LOV4, and LOW1 and even add larger scratch
space. What I didn't tell you was my plan to master Kickstart unattended
installation method with post installation scripts to preform such
upgrade. That will on the long be a huge time saver for me as I am
shifting from playing with computers to actually thinking about
scientific problems. 

Long story short Kickstart is little bit more complicate than I
anticipated so I logged into LOV3, LOV4, LOW1 to upgrade MATLAB to
R2015b until I muster the concept. However several of you have running
MATLAB experiments. I decided against stopping those jobs. Please let me
know if MATLAB stops working for you on these three compuring nodes due
to the licensing issues. I will upgrade MATLAB promptly until I am ready
to preform OS upgrade.

Best,
Predrag


From predragp at cs.cmu.edu  Mon Oct 19 12:16:59 2015
From: predragp at cs.cmu.edu (Predrag Punosevac)
Date: Mon, 19 Oct 2015 12:16:59 -0400
Subject: MATLAB upgrades LOV3, LOV4, LOW1
Message-ID: <20151019161659.ZM-W7Qjx4n1j%predragp@cs.cmu.edu>

I have done it this morning. The computing nodes had to be rebooted due
to the number of orphan processes I could not kill.

Predrag

From predragp at cs.cmu.edu  Mon Oct 19 12:23:26 2015
From: predragp at cs.cmu.edu (Predrag Punosevac)
Date: Mon, 19 Oct 2015 12:23:26 -0400
Subject: Auton Lab website back on-line
Message-ID: <20151019162326.ylRixabSH7Pc%predragp@cs.cmu.edu>

Some of you might have noticed that Auton Lab main website was briefly
down due to the memory leak in Daisy CMS. I restarted Daisy and things
are back on line now. Hopefully we will have new website soon so we will
not have to go through this routine again.

Predrag