[abrt] R-core: R killed by SIGABRT
auton.sysnotify at gmail.com
auton.sysnotify at gmail.com
Thu May 4 16:18:12 EDT 2017
reason: R killed by SIGABRT
cmdline: /usr/lib64/R/bin/exec/R
executable: /usr/lib64/R/bin/exec/R
package: R-core-3.3.3-1.sdl7
component: R
pid: 14284
pwd: /home/scratch/jieshic/HAT/models/retro_experiment
hostname: ari.int.autonlab.org
count: 1
abrt_version: 2.1.11
analyzer: CCpp
architecture: x86_64
event_log:
global_pid: 14284
kernel: 3.10.0-327.4.4.el7.x86_64
last_occurrence: 1493929029
os_release: Springdale Linux release 7.3 (Verona)
pkg_arch: x86_64
pkg_epoch: 0
pkg_fingerprint: 16CF C333 41A4 0948
pkg_name: R-core
pkg_release: 1.sdl7
pkg_vendor: (none)
pkg_version: 3.3.3
runlevel: N 3
time: Thu 04 May 2017 04:17:09 PM EDT
type: CCpp
uid: 1010
username: jieshic
uuid: 0055d55069cd7cb57edb9e3e7769bfec691eb30f
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open_fds:
:0:/dev/pts/3
:pos: 0
:flags: 0100002
:mnt_id: 23
:1:/dev/pts/3
:pos: 0
:flags: 0100002
:mnt_id: 23
:2:/dev/pts/3
:pos: 0
:flags: 0100002
:mnt_id: 23
:3:/var/lib/sss/mc/passwd
:pos: 0
:flags: 02100000
:mnt_id: 60
:4:/var/lib/sss/mc/group
:pos: 0
:flags: 02100000
:mnt_id: 60
:5:socket:[132894340]
:pos: 0
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:mnt_id: 7
:6:/dev/tty
:pos: 0
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os_info:
:NAME="Springdale Linux"
:VERSION="7.3 (Verona)"
:ID="rhel"
:ID_LIKE="fedora"
:VERSION_ID="7.3"
:PRETTY_NAME="Springdale Linux 7.3 (Verona)"
:ANSI_COLOR="0;32"
:CPE_NAME="cpe:/o:springdale:linux:7.3:GA"
:HOME_URL="http://springdale.princeton.edu/"
:BUG_REPORT_URL="https://springdale.math.ias.edu/"
:
:REDHAT_BUGZILLA_PRODUCT="Springdale Linux 7"
:REDHAT_BUGZILLA_PRODUCT_VERSION=7.3
:REDHAT_SUPPORT_PRODUCT="Springdale Linux"
:REDHAT_SUPPORT_PRODUCT_VERSION=7.3
proc_pid_status:
:Name: R
:State: S (sleeping)
:Tgid: 14284
:Ngid: 14284
:Pid: 14284
:PPid: 14137
:TracerPid: 0
:Uid: 1010 1010 1010 1010
:Gid: 1010 1010 1010 1010
:FDSize: 256
:Groups: 501 507 509 515 520 1010
:VmPeak: 6040640 kB
:VmSize: 4576352 kB
:VmLck: 0 kB
:VmPin: 0 kB
:VmHWM: 4911144 kB
:VmRSS: 4186684 kB
:VmData: 4274672 kB
:VmStk: 172 kB
:VmExe: 4 kB
:VmLib: 76028 kB
:VmPTE: 8516 kB
:VmSwap: 0 kB
:Threads: 1
:SigQ: 0/2063073
:SigPnd: 0000000000000000
:ShdPnd: 0000000000000000
:SigBlk: 0000000000000000
:SigIgn: 0000000000000000
:SigCgt: 0000000180011e4a
:CapInh: 0000000000000000
:CapPrm: 0000000000000000
:CapEff: 0000000000000000
:CapBnd: 0000001fffffffff
:Seccomp: 0
:Cpus_allowed: ffffffff
:Cpus_allowed_list: 0-31
:Mems_allowed: 00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,00000000,0000000f
:Mems_allowed_list: 0-3
:voluntary_ctxt_switches: 4344
:nonvoluntary_ctxt_switches: 21648
var_log_messages:
:[System Logs]:
:May 04 13:04:26 ari.int.autonlab.org smartd[23389]: Device: /dev/sdd [SAT], SMART Usage Attribute: 190 Airflow_Temperature_Cel changed from 71 to 72
:May 04 13:04:26 ari.int.autonlab.org smartd[23389]: Device: /dev/sdd [SAT], SMART Usage Attribute: 194 Temperature_Celsius changed from 29 to 28
:May 04 13:04:26 ari.int.autonlab.org smartd[23389]: Device: /dev/sde [SAT], SMART Usage Attribute: 190 Airflow_Temperature_Cel changed from 68 to 69
:May 04 13:04:26 ari.int.autonlab.org smartd[23389]: Device: /dev/sde [SAT], SMART Usage Attribute: 194 Temperature_Celsius changed from 32 to 31
:May 04 13:10:01 ari.int.autonlab.org CROND[1350]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 13:20:01 ari.int.autonlab.org CROND[4143]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 13:30:01 ari.int.autonlab.org CROND[6893]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 13:40:01 ari.int.autonlab.org CROND[9586]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 13:50:01 ari.int.autonlab.org CROND[12284]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 13:58:12 ari.int.autonlab.org sshd[14552]: debug1: PAM: setting PAM_RHOST to "lop1.int.autonlab.org"
:May 04 13:58:13 ari.int.autonlab.org sshd[14554]: debug1: Received SIGCHLD.
:May 04 13:58:15 ari.int.autonlab.org /usr/bin/x2goresume-session[14738]: client 192.168.6.12 has successfully resumed session with ID ram-50-1493842064_stRxterm_dp32
:May 04 13:58:15 ari.int.autonlab.org sshd[14554]: debug1: Received SIGCHLD.
:May 04 13:58:16 ari.int.autonlab.org sshd[14554]: debug1: Received SIGCHLD.
:May 04 13:58:16 ari.int.autonlab.org sshd[14554]: debug1: Received SIGCHLD.
:May 04 13:58:16 ari.int.autonlab.org sshd[14554]: debug1: Received SIGCHLD.
:May 04 13:58:17 ari.int.autonlab.org /usr/bin/x2gomountdirs[14835]: successfully mounted ram at 127.0.0.1:55079/cygdrive/C/Users/ram/X2GO~1/S-D9EF~1/spool to /tmp/.x2go-ram/spool/C-ram-50-1493842064_stRxterm_dp32
:May 04 13:58:17 ari.int.autonlab.org sshd[14554]: debug1: Received SIGCHLD.
:May 04 13:58:19 ari.int.autonlab.org /usr/bin/x2gosetkeyboard[14877]: Setting X keyboard according to /zfsauton/home/ram/.x2go/C-ram-50-1493842064_stRxterm_dp32/keyboard
:May 04 14:00:01 ari.int.autonlab.org CROND[15373]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 14:01:01 ari.int.autonlab.org CROND[15659]: (root) CMD (run-parts /etc/cron.hourly)
:May 04 14:04:25 ari.int.autonlab.org smartd[23389]: Device: /dev/sda [SAT], SMART Usage Attribute: 190 Airflow_Temperature_Cel changed from 70 to 69
:May 04 14:04:25 ari.int.autonlab.org smartd[23389]: Device: /dev/sda [SAT], SMART Usage Attribute: 194 Temperature_Celsius changed from 30 to 31
:May 04 14:04:26 ari.int.autonlab.org smartd[23389]: Device: /dev/sdd [SAT], SMART Usage Attribute: 190 Airflow_Temperature_Cel changed from 72 to 71
:May 04 14:04:26 ari.int.autonlab.org smartd[23389]: Device: /dev/sdd [SAT], SMART Usage Attribute: 194 Temperature_Celsius changed from 28 to 29
:May 04 14:04:26 ari.int.autonlab.org smartd[23389]: Device: /dev/sde [SAT], SMART Usage Attribute: 190 Airflow_Temperature_Cel changed from 69 to 68
:May 04 14:04:26 ari.int.autonlab.org smartd[23389]: Device: /dev/sde [SAT], SMART Usage Attribute: 194 Temperature_Celsius changed from 31 to 32
:May 04 14:08:15 ari.int.autonlab.org sshd[17625]: debug1: SSH2_MSG_KEX_DH_GEX_REQUEST received [preauth]
:May 04 14:08:15 ari.int.autonlab.org sshd[17625]: debug1: SSH2_MSG_KEX_DH_GEX_GROUP sent [preauth]
:May 04 14:08:15 ari.int.autonlab.org sshd[17625]: debug1: SSH2_MSG_KEX_DH_GEX_REPLY sent [preauth]
:May 04 14:08:16 ari.int.autonlab.org sshd[17625]: debug1: PAM: setting PAM_RHOST to "10.8.0.46"
:May 04 14:08:16 ari.int.autonlab.org sshd[17625]: Found matching RSA key: 35:f6:fd:c4:d9:20:5f:2b:ad:c3:9a:b9:94:ad:db:3e
:May 04 14:08:16 ari.int.autonlab.org sshd[17625]: Found matching RSA key: 35:f6:fd:c4:d9:20:5f:2b:ad:c3:9a:b9:94:ad:db:3e
:May 04 14:08:16 ari.int.autonlab.org sshd[17625]: error: RSA_public_decrypt failed: error:0407006A:lib(4):func(112):reason(106)
:May 04 14:08:16 ari.int.autonlab.org sshd[17625]: Failed publickey for mille856 from 10.8.0.46 port 42618 ssh2: RSA 35:f6:fd:c4:d9:20:5f:2b:ad:c3:9a:b9:94:ad:db:3e
:May 04 14:08:29 ari.int.autonlab.org sshd[17645]: debug1: Received SIGCHLD.
:May 04 14:08:29 ari.int.autonlab.org sshd[17645]: Received disconnect from 10.8.0.46: 11: disconnected by user
:May 04 14:08:29 ari.int.autonlab.org systemd-logind[1230]: Removed session 10150.
:May 04 14:08:29 ari.int.autonlab.org systemd[1]: Removed slice user-1008.slice.
:May 04 14:10:01 ari.int.autonlab.org CROND[18163]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 14:17:19 ari.int.autonlab.org sshd[20752]: debug1: SSH2_MSG_KEX_DH_GEX_REQUEST received [preauth]
:May 04 14:17:19 ari.int.autonlab.org sshd[20752]: debug1: SSH2_MSG_KEX_DH_GEX_GROUP sent [preauth]
:May 04 14:17:19 ari.int.autonlab.org sshd[20752]: debug1: SSH2_MSG_KEX_DH_GEX_REPLY sent [preauth]
:May 04 14:17:19 ari.int.autonlab.org sshd[20752]: debug1: PAM: setting PAM_RHOST to "10.8.0.46"
:May 04 14:17:25 ari.int.autonlab.org sshd[20752]: Found matching RSA key: 35:f6:fd:c4:d9:20:5f:2b:ad:c3:9a:b9:94:ad:db:3e
:May 04 14:17:25 ari.int.autonlab.org sshd[20752]: Found matching RSA key: 35:f6:fd:c4:d9:20:5f:2b:ad:c3:9a:b9:94:ad:db:3e
:May 04 14:17:25 ari.int.autonlab.org sshd[20752]: error: RSA_public_decrypt failed: error:0407006A:lib(4):func(112):reason(106)
:May 04 14:17:25 ari.int.autonlab.org sshd[20752]: Failed publickey for mille856 from 10.8.0.46 port 42636 ssh2: RSA 35:f6:fd:c4:d9:20:5f:2b:ad:c3:9a:b9:94:ad:db:3e
:May 04 14:17:34 ari.int.autonlab.org sshd[20877]: debug1: PAM: setting PAM_RHOST to "10.8.0.30"
:May 04 14:17:40 ari.int.autonlab.org sshd[20877]: Found matching RSA key: b3:b1:dc:d1:67:79:52:ef:0b:a5:5d:e1:b9:e4:0a:00
:May 04 14:17:40 ari.int.autonlab.org sshd[20877]: Found matching RSA key: b3:b1:dc:d1:67:79:52:ef:0b:a5:5d:e1:b9:e4:0a:00
:May 04 14:17:40 ari.int.autonlab.org sshd[20877]: Accepted publickey for sheath from 10.8.0.30 port 52872 ssh2: RSA b3:b1:dc:d1:67:79:52:ef:0b:a5:5d:e1:b9:e4:0a:00
:May 04 14:17:43 ari.int.autonlab.org sshd[20907]: debug1: Received SIGCHLD.
:May 04 14:17:43 ari.int.autonlab.org sshd[20907]: Received disconnect from 10.8.0.30: 11: disconnected by user
:May 04 14:17:43 ari.int.autonlab.org systemd-logind[1230]: Removed session 10153.
:May 04 14:17:43 ari.int.autonlab.org systemd[1]: Removed slice user-1087.slice.
:May 04 14:17:47 ari.int.autonlab.org sshd[21024]: debug1: PAM: setting PAM_RHOST to "10.8.0.30"
:May 04 14:17:47 ari.int.autonlab.org sshd[21024]: Found matching RSA key: b3:b1:dc:d1:67:79:52:ef:0b:a5:5d:e1:b9:e4:0a:00
:May 04 14:17:47 ari.int.autonlab.org sshd[21024]: Found matching RSA key: b3:b1:dc:d1:67:79:52:ef:0b:a5:5d:e1:b9:e4:0a:00
:May 04 14:17:47 ari.int.autonlab.org sshd[21024]: Accepted publickey for sheath from 10.8.0.30 port 52874 ssh2: RSA b3:b1:dc:d1:67:79:52:ef:0b:a5:5d:e1:b9:e4:0a:00
:May 04 14:17:49 ari.int.autonlab.org sshd[21035]: debug1: Received SIGCHLD.
:May 04 14:17:49 ari.int.autonlab.org sshd[21035]: Received disconnect from 10.8.0.30: 11: disconnected by user
:May 04 14:17:49 ari.int.autonlab.org systemd-logind[1230]: Removed session 10154.
:May 04 14:17:49 ari.int.autonlab.org systemd[1]: Removed slice user-1087.slice.
:May 04 14:18:05 ari.int.autonlab.org sshd[20808]: debug1: Received SIGCHLD.
:May 04 14:18:05 ari.int.autonlab.org sshd[20808]: Received disconnect from 10.8.0.46: 11: disconnected by user
:May 04 14:18:05 ari.int.autonlab.org systemd-logind[1230]: Removed session 10152.
:May 04 14:18:05 ari.int.autonlab.org systemd[1]: Removed slice user-1008.slice.
:May 04 14:20:01 ari.int.autonlab.org CROND[21685]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 14:30:01 ari.int.autonlab.org CROND[24390]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 14:40:01 ari.int.autonlab.org CROND[27090]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 14:50:01 ari.int.autonlab.org CROND[29788]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 15:00:01 ari.int.autonlab.org CROND[32484]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 15:01:01 ari.int.autonlab.org CROND[300]: (root) CMD (run-parts /etc/cron.hourly)
:May 04 15:10:01 ari.int.autonlab.org CROND[2851]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 15:20:01 ari.int.autonlab.org CROND[5654]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 15:30:01 ari.int.autonlab.org CROND[8355]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 15:40:01 ari.int.autonlab.org CROND[11045]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 15:50:01 ari.int.autonlab.org CROND[13807]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 15:51:08 ari.int.autonlab.org sshd[14115]: debug1: SSH2_MSG_KEX_DH_GEX_REQUEST received [preauth]
:May 04 15:51:08 ari.int.autonlab.org sshd[14115]: debug1: SSH2_MSG_KEX_DH_GEX_GROUP sent [preauth]
:May 04 15:51:08 ari.int.autonlab.org sshd[14115]: debug1: SSH2_MSG_KEX_DH_GEX_REPLY sent [preauth]
:May 04 15:51:08 ari.int.autonlab.org sshd[14115]: debug1: PAM: setting PAM_RHOST to "10.8.0.10"
:May 04 15:51:08 ari.int.autonlab.org sshd[14115]: Failed publickey for jieshic from 10.8.0.10 port 44552 ssh2: RSA f2:0e:98:53:1f:6d:6f:f9:45:fe:57:8d:3b:d9:c5:0c
:May 04 16:00:01 ari.int.autonlab.org CROND[16717]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 16:01:01 ari.int.autonlab.org CROND[17002]: (root) CMD (run-parts /etc/cron.hourly)
:May 04 16:04:26 ari.int.autonlab.org smartd[23389]: Device: /dev/sdc [SAT], SMART Usage Attribute: 190 Airflow_Temperature_Cel changed from 72 to 71
:May 04 16:04:26 ari.int.autonlab.org smartd[23389]: Device: /dev/sdc [SAT], SMART Usage Attribute: 194 Temperature_Celsius changed from 28 to 29
:May 04 16:04:26 ari.int.autonlab.org smartd[23389]: Device: /dev/sdf [SAT], SMART Usage Attribute: 190 Airflow_Temperature_Cel changed from 71 to 70
:May 04 16:04:26 ari.int.autonlab.org smartd[23389]: Device: /dev/sdf [SAT], SMART Usage Attribute: 194 Temperature_Celsius changed from 29 to 30
:May 04 16:10:01 ari.int.autonlab.org CROND[20014]: (root) CMD (/usr/lib64/sa/sa1 1 1)
:May 04 16:17:09 ari.int.autonlab.org abrt-hook-ccpp[22000]: Process 14284 (R) of user 1010 killed by SIGABRT - dumping core
:May 04 16:17:30 ari.int.autonlab.org sshd[14136]: Received disconnect from 10.8.0.10: 11: disconnected by user
:May 04 16:17:34 ari.int.autonlab.org sshd[22118]: debug1: SSH2_MSG_KEX_DH_GEX_REQUEST received [preauth]
:May 04 16:17:34 ari.int.autonlab.org sshd[22118]: debug1: SSH2_MSG_KEX_DH_GEX_GROUP sent [preauth]
:May 04 16:17:34 ari.int.autonlab.org sshd[22118]: debug1: SSH2_MSG_KEX_DH_GEX_REPLY sent [preauth]
:May 04 16:17:34 ari.int.autonlab.org sshd[22118]: debug1: PAM: setting PAM_RHOST to "10.8.0.10"
:May 04 16:17:34 ari.int.autonlab.org sshd[22118]: Failed publickey for jieshic from 10.8.0.10 port 44718 ssh2: RSA f2:0e:98:53:1f:6d:6f:f9:45:fe:57:8d:3b:d9:c5:0c
:May 04 16:17:39 ari.int.autonlab.org systemd-logind[1230]: Removed session 10166.
:[User Logs]:
:Mar 22 11:43:04 ari.int.autonlab.org sshd[22689]: Received disconnect from 10.8.0.10: 11: disconnected by user
:Mar 22 11:43:26 ari.int.autonlab.org sshd[6556]: Received disconnect from 10.8.0.10: 11: disconnected by user
:Mar 22 14:47:18 ari.int.autonlab.org sshd[26816]: Received disconnect from 10.8.0.10: 11: disconnected by user
:Mar 27 13:27:21 ari.int.autonlab.org sshd[1490]: debug1: Received SIGCHLD.
:Mar 27 13:27:21 ari.int.autonlab.org sshd[1490]: Received disconnect from 10.8.0.10: 11: disconnected by user
:Apr 03 13:54:24 ari.int.autonlab.org sshd[2487]: debug1: Received SIGCHLD.
:Apr 03 13:54:24 ari.int.autonlab.org sshd[2487]: Received disconnect from 10.8.0.10: 11: disconnected by user
:Apr 05 15:44:04 ari.int.autonlab.org sshd[26617]: debug1: Received SIGCHLD.
:Apr 05 15:44:04 ari.int.autonlab.org sshd[26617]: Received disconnect from 10.8.0.10: 11: disconnected by user
:Apr 09 22:47:17 ari.int.autonlab.org sshd[8900]: Received disconnect from 10.8.0.10: 11: disconnected by user
:Apr 18 11:48:04 ari.int.autonlab.org python2.7[22873]: detected unhandled Python exception in '../routeresolution/RouteResolution.py'
:Apr 18 12:10:02 ari.int.autonlab.org sshd[28910]: debug1: Received SIGCHLD.
:Apr 18 12:10:02 ari.int.autonlab.org sshd[28910]: Received disconnect from 10.8.0.10: 11: disconnected by user
:Apr 18 15:05:04 ari.int.autonlab.org sshd[20698]: debug1: Received SIGCHLD.
:Apr 18 15:05:04 ari.int.autonlab.org sshd[20698]: Received disconnect from 10.8.0.10: 11: disconnected by user
:Apr 18 15:05:22 ari.int.autonlab.org sshd[30714]: debug1: Received SIGCHLD.
:Apr 18 15:05:22 ari.int.autonlab.org sshd[30714]: Received disconnect from 10.8.0.10: 11: disconnected by user
:Apr 18 15:40:34 ari.int.autonlab.org sshd[13794]: Read error from remote host 10.8.0.10: Connection reset by peer
:Apr 18 16:23:43 ari.int.autonlab.org sshd[24414]: Read error from remote host 10.8.0.10: Connection reset by peer
:Apr 18 16:54:18 ari.int.autonlab.org sshd[5583]: Read error from remote host 10.8.0.10: Connection reset by peer
:Apr 27 12:05:27 ari.int.autonlab.org sshd[31608]: Read error from remote host 10.8.0.10: Connection reset by peer
:Apr 27 13:01:23 ari.int.autonlab.org sshd[24877]: Read error from remote host 10.8.0.10: Connection reset by peer
:May 04 09:56:14 ari.int.autonlab.org sshd[16803]: debug1: Received SIGCHLD.
:May 04 09:56:14 ari.int.autonlab.org sshd[16803]: Received disconnect from 10.8.0.10: 11: disconnected by user
:May 04 09:56:26 ari.int.autonlab.org sshd[17568]: debug1: Received SIGCHLD.
:May 04 09:56:26 ari.int.autonlab.org sshd[17568]: Received disconnect from 10.8.0.10: 11: disconnected by user
:May 04 16:17:30 ari.int.autonlab.org sshd[14136]: Received disconnect from 10.8.0.10: 11: disconnected by user
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